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PhyloTree.org -
mtDNA tree Build 17 (18 Feb 2016): subtree L1 |
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Citation: van Oven M, Kayser M.
2009. Updated comprehensive phylogenetic tree of global human mitochondrial
DNA variation. Hum Mutat
30(2):E386-E394. |
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Nucleotide position numbers are consistent with
both the rCRS and the RSRS reference sequences. |
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Mutations are given in forward evolutionary
time direction in the format [ancestral base][position number][derived base],
e.g. "G15043A". |
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In case of a transversion, the derived allele
is shown in lowercase instead of uppercase, e.g. "C5178a". |
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Insertions are indicated by the position number
preceding the insertion followed by a dot (.), the relative insert position,
and the inserted base(s), e.g. "2156.1A". |
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Deletions are indicated by the letter
"d" following the (range of) position number(s) involved, e.g.
"A249d" or "8281-8289d". |
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Mutations that are reversions to an ancestral
state (back mutations) are indicated with an exclamation mark (!), two
exclamation marks for a double back mutation (!!), etc., e.g.
"A15301G!". |
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Coding-region mutations (np 577-16023) are
shown in black; control-region mutations (np 16024-576) in blue. |
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Mutations between brackets () are
recurrent/unstable within the respective clade, or are yet uncertain based on
current data. |
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Mutation motifs in italic are preliminary and are likely to be further refined as
additional sequences become available. |
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The mutations 309.1C(C), 315.1C, AC indels at
515-522, A16182c, A16183c, 16193.1C(C) and C16519T/T16519C were not
considered for phylogenetic reconstruction and are therefore excluded from
the tree. |
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Accession numbers provided at the tips of
branches are representative examples of mtDNA sequences available at GenBank
or from individuals included in HapMap/1000Genomes. |
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It may be convenient to use the Find function
(Ctrl+F) of your browser to search for a particular mutation or haplogroup. |
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Example accessions |
mt-MRCA (RSRS) |
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L1'2'3'4'5'6 |
C146T
C182T
T4312C T10664C C10915T
A11914G G13276A G16230A |
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L2'3'4'5'6 |
C152T A2758G
C2885T G7146A T8468C |
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L2'3'4'6 |
C195T
A247G
A825t T8655C A10688G
C10810T G13105A T13506C
G15301A A16129G T16187C C16189T |
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L3'4'6 |
G4104A
A7521G |
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L3'4 |
T182C! T3594C
T7256C T13650C T16278C |
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L3 |
A769G
A1018G C16311T |
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N |
G8701A
C9540T G10398A C10873T
A15301G! |
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R |
T12705C
T16223C |
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R0 |
G73A A11719G |
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HV |
T14766C |
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H |
G2706A
T7028C |
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H2 |
G1438A |
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H2a |
G4769A |
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H2a2 |
G750A |
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H2a2a |
G8860A
G15326A |
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H2a2a1 |
G263A |
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rCRS |
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L1 |
G3666A
A7055G T7389C T13789C
T14178C G14560A |
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L1b |
G185t
A357G
G709A T710C G1438A
T1738C T2352C A2768G
T3308C G3693A C6548T
T6827C A6989G C7867T
A8248G T12519C A14769G
T15115C T16126C A16129G C16264T
C16270T (A16293G) |
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L1b1 |
A5036G
G5046A T5655C C13880a
A14203G |
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DQ112737 |
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L1b1a |
T5393C |
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JN214480 |
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L1b1a1'4 |
C16114a |
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L1b1a1 |
C264T T3396C
A16215G |
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L1b1a4 |
G8790A |
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JQ045107 |
NA20322 |
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L1b1a4a |
G13194A |
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AY195783 |
JQ044792 |
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L1b1a2 |
T7954C |
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EU092672 |
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L1b1a2a |
A16289G |
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EU092775 |
EU092952 |
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A189G |
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JN214471 |
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L1b1a3 |
G13980A |
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DQ304908 |
JX303892 |
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L1b1a3a |
C7915T |
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DQ304914 |
DQ304905 |
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L1b1a3a1 |
T11254C |
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DQ304906 |
JQ044875 |
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L1b1a3b |
G1719A
T4216C |
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JQ703036 |
DQ304907 |
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L1b1a9 |
G6446A |
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EU092737 |
JQ044876 |
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L1b1a15 |
G15077A
C15103T |
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NA19462 |
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L1b1a15a |
C16355T |
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NA19198 |
JQ705587 |
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L1b1a17 |
T15629C |
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JQ704683 |
JQ045115 |
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L1b1a18 |
T182C! T12609C
T12696C |
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JQ705606 |
NA18501 |
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L1b1a5 |
C14812T |
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NA20753 |
EU092928 |
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L1b1a6 |
G9755A
T14110C |
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EU092716 |
JN214461 |
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L1b1a7 |
T6378C |
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DQ304923 |
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L1b1a7a |
G228A A14053G |
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DQ282505 |
JQ704825 |
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L1b1a8 |
A7298G |
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JQ704968 |
JN214430 |
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L1b1a10 |
C151T |
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JQ045100 |
JQ705832 |
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L1b1a10a |
A15763G |
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EU092893 |
EU092884 |
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L1b1a10b |
T11506C |
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EU092852 |
JX303846 |
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L1b1a12 |
G1462A
C16400T |
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L1b1a12a |
A11002G |
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FJ460537 |
JN214463 |
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L1b1a12b |
A7298G
T16187C |
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JQ705931 |
EU200764 |
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L1b1a13 |
T5509C |
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JN214477 |
FJ460522 |
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L1b1a14 |
A12512t |
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JQ045114 |
JN214468 |
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L1b1a16 |
T185C G14016A
G14040A |
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JN214460 |
EU092667 |
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L1b2'3 |
C195T |
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L1b2 |
A189G C12891T
A13893G G14323A C16239T |
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NA19909 |
JQ044866 |
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L1b2a |
T146C! A12171G
C16111T
T16264C! |
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HM771162 |
JN214470 |
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L1b3 |
A723G
A4562G A7972G C14800T |
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JQ044936 |
JQ045038 |
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L1c |
C151T
C186a A189c G316A A2395d
A5951G T6071C G8027A
A9072G G10586A A12810G
A13485G T14000a C14911T
C16294T
C16360T |
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L1c1'2'4'5'6 |
A297G |
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L1c1'2'4'6 |
C198T T10321C |
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L1c1 |
A3796t
A3843G A14148G A16293G |
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L1c1a'b'd |
T11899C |
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L1c1a |
T4454a
T8087C T14088C |
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JQ705275 |
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T198C! |
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L1c1a1 |
G10398A
T14034C T16223C |
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L1c1a1a |
44.1C
T204C
C11257T C16214T C16234T T16249C |
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L1c1a1a1 |
T182C!
C467T
A2308G A5984G A11167G
A12930t G16274A |
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L1c1a1a1a |
G6182A
T8928C T9311C T15663C
G16293A! |
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EU273490 |
HM771127 |
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L1c1a1a1b |
C204T!
A16051G A16258G |
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EU273481 |
EU273497 |
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L1c1a1a1b1 |
C5300T |
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EU273478 |
EU597501 |
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L1c1a1a2 |
G4491A
T10667C G13194A A16129G |
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EU273500 |
EU273484 |
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L1c1a1b |
C195T T2141C
T5277C A8769G A9580G
G12164A T13174C G14040A
G15777A A16129G
C16184T T16360C! |
EU273491 |
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L1c1a2 |
A93G
A95c T151C! T236C A2755G
T2863C C3513T A3927G
A4506G A7202G T9647C
A12768G G16274A |
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L1c1a2a |
T4634C
A9336G T12477C |
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L1c1a2a1 |
T7692C |
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HM771217 |
EU273496 |
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L1c1a2a2 |
T15289C |
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HM771180 |
HM771164 |
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L1c1a2b |
C152T A6752G
T7660C C7693T C9272T |
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EU273476 |
HM771137 |
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L1c1a2c |
A8266G
G12007A T13879C |
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HM771114 |
HM771113 |
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L1c1b'd |
T16086C |
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L1c1b |
T1291C
T4688C T5553C C8619T
T9861C T10084C T12681C
A14393G A16241G |
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NA19917 |
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L1c1b1 |
A4824G
T8277C C15025T C16291T G16293A! |
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EU273499 |
HM771220 |
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L1c1d |
G5460A
G11914A! G15301A C15626T
A16038G |
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NA19385 |
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L1c1d1 |
T5108C
C7948T |
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FJ713601 |
AF346987 |
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L1c1c |
T198C!
A249d
G6267A G8387A A8389G
T9233C C11335T T12879C
T16172C
T16187C T16294C! |
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EU092717 |
JQ701901 |
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L1c2'4 |
5899.1C
C12049T A13149G |
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L1c2 |
G6150A
T6253C A7076G G7337A
A8784G T8877C A10792G
C10793T A11654G A16265c C16286g
C16527T |
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L1c2a |
T1420C
2156.1A C15016T T15784C |
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L1c2a1 |
G16145A
G16213A |
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L1c2a1a |
T7744C
G8251A C13212T T13281C
C14812T C16071T C16234T |
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AF346992 |
JX303855 |
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L1c2a1b |
T3777C
G5237A |
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L1c2a2 |
G709A
G3438A C5899.1d! C7070T
C7160T A7301G G8701A
T9018C T13437C T16288C T16357C
T16360C! |
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EU273501 |
EU092864 |
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L1c2a3 |
T471C G6723A
A11329G G14861A |
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EU092848 |
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L1c2a3a |
A385G C1048T
T7741C A14127G A16129G T16172C |
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KC533467 |
JX303782 |
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L1c2b |
A11164G
(T16093C)
(G16286A) |
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L1c2b1 |
T10031C |
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L1c2b1a'b |
A2220G |
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DQ341059 |
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L1c2b1a |
T5580C
C6209T A14071G |
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HM771222 |
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L1c2b1a1 |
A3349G
C7675T G12771A |
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KC152939 |
JQ705864 |
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L1c2b1b |
T5087C
G6480A A9108G C12669T |
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EU092849 |
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L1c2b1b1 |
C264T C3275g
C6173T |
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JQ705650 |
JX303883 |
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L1c2b1c |
A633G
A723G G3421A T3777C
T5580C A5894d T10071C
T15672C C16292T |
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EU092712 |
JQ702903 |
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L1c2b2 |
T8567C
A13269G C16320T |
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HM771221 |
EU092738 |
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L1c4 |
T151C!
T198C!
T5196C A6629G A7673G
A7960G G9266A A9545G
A13741G T13879C C16184T C16301T |
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L1c4a |
C280T G1503A
G4596A T4937C G4959A
G5054A A11337G T11854C
G12940A T14182C T15191C
A16037G
T16093C T16140C |
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EU273502 |
HM771117 |
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L1c4b |
A4706G
A11002G |
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JF812599 |
JQ703773 |
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L1c6 |
G930A
A2251G G5231A T14470C |
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EU273489 |
JQ044836 |
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L1c5 |
A291t G709A
A5390G G7762A T8143C
8281-8289d T9899C G11150A
A12425G G12630A G13359A
G13368A T15449C G15553A
T15941C (C16114a)
C16261T T16294C! |
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JX303797 |
JQ702617 |
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L1c3 |
C195T T6221a
G6917A G7055A! C11302T
A15226G T15905C C15978T |
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L1c3a |
G6260A
G7498A G7789A G9966A
C12019T G12501A T16187C A16215G |
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EU092703 |
JX303824 |
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L1c3a1 |
A3105G |
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L1c3a1a |
T2387C
T12616C |
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EU935458 |
EU092718 |
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L1c3a1b |
T8668C
C16355T |
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JX303871 |
EU092956 |
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L1c3b'c |
C2283T
A16293G |
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L1c3b |
G8251A
C13981T C14794T A16163G |
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L1c3b1 |
T629C
C3210T A3434G T4755C
C8417T A12400G C12542T
T16017C |
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HG01378 |
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L1c3b1a |
A11317G
G13708A T16209C |
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HG01080 |
EU273488 |
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L1c3b1b |
A1686G
T2083C |
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JQ702600 |
EU092689 |
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L1c3b2 |
T2283C!
T3096C T6297C A6353G
G7805A A7844G A14128G
G14831A A15244G A15924G
T16086C |
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NA19256 |
NA19163 |
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L1c3c |
A93G
T195C! A248G C458T 745.1T
T3027C C3525T C3600T
G4853A G11852A T11984C
A12507G A14669G |
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EU273493 |
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