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PhyloTree.org -
mtDNA tree Build 17 (18 Feb 2016): subtree L2 |
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Citation: van Oven M, Kayser M.
2009. Updated comprehensive phylogenetic tree of global human mitochondrial
DNA variation. Hum Mutat 30(2):E386-E394. |
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Nucleotide position numbers are consistent
with both the rCRS and the RSRS reference sequences. |
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Mutations are given in forward evolutionary
time direction in the format [ancestral base][position number][derived base],
e.g. "G15043A". |
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In case of a transversion, the derived allele
is shown in lowercase instead of uppercase, e.g. "C5178a". |
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Insertions are indicated by the position
number preceding the insertion followed by a dot (.), the relative insert
position, and the inserted base(s), e.g. "2156.1A". |
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Deletions are indicated by the letter
"d" following the (range of) position number(s) involved, e.g.
"A249d" or "8281-8289d". |
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Mutations that are reversions to an ancestral
state (back mutations) are indicated with an exclamation mark (!), two
exclamation marks for a double back mutation (!!), etc., e.g.
"A15301G!". |
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Coding-region mutations (np 577-16023) are
shown in black; control-region mutations (np 16024-576) in blue. |
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Mutations between brackets () are
recurrent/unstable within the respective clade, or are yet uncertain based on
current data. |
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Mutation motifs in italic are preliminary and are likely to be further refined as
additional sequences become available. |
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The mutations 309.1C(C), 315.1C, AC indels at
515-522, A16182c, A16183c, 16193.1C(C) and C16519T/T16519C were not
considered for phylogenetic reconstruction and are therefore excluded from
the tree. |
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Accession numbers provided at the tips of
branches are representative examples of mtDNA sequences available at GenBank
or from individuals included in HapMap/1000Genomes. |
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It may be convenient to use the Find function
(Ctrl+F) of your browser to search for a particular mutation or haplogroup. |
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Example accessions |
mt-MRCA (RSRS) |
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L1'2'3'4'5'6 |
C146T
C182T
T4312C T10664C C10915T
A11914G G13276A G16230A |
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L2'3'4'5'6 |
C152T A2758G
C2885T G7146A T8468C |
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L2'3'4'6 |
C195T
A247G
A825t T8655C A10688G
C10810T G13105A T13506C
G15301A A16129G
T16187C C16189T |
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L3'4'6 |
G4104A
A7521G |
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L3'4 |
T182C! T3594C
T7256C T13650C T16278C |
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L3 |
A769G
A1018G C16311T |
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N |
G8701A
C9540T G10398A C10873T
A15301G! |
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R |
T12705C
T16223C |
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R0 |
G73A A11719G |
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HV |
T14766C |
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H |
G2706A
T7028C |
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H2 |
G1438A |
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H2a |
G4769A |
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H2a2 |
G750A |
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H2a2a |
G8860A
G15326A |
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H2a2a1 |
G263A |
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rCRS |
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L2 |
T146C!
C150T T152C! T2416C G8206A
A9221G T10115C G13590A
C16311T G16390A |
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L2a'b'c'd |
T195C! T11944C |
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L2a |
T150C! T7175C |
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L2a1'2'3'4 |
C2789T
C7274T A7771G G11914A!
A13803G A14566G C16294T |
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L2a1 |
T182C! A12693G
T15784C A16309G |
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L2a1a |
G3918A
A5285G A15244G T15629C |
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DQ304928 |
EU092916 |
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L2a1a1 |
T6152C
C15391T T16368C |
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NA19266 |
DQ304933 |
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L2a1a2 |
C16286T |
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JN214449 |
DQ304968 |
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L2a1a2a |
T10454C |
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DQ304975 |
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L2a1a2a1 |
C15211T |
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NA20287 |
JQ044968 |
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L2a1a2a1a |
A15421G |
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NA19117 |
DQ304976 |
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L2a1a2b |
T3336C |
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DQ304972 |
JQ045095 |
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L2a1a2c |
T5492C
C8841T A13615G |
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HQ425645 |
DQ304927 |
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L2a1a3 |
G143A
(T16093C) |
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EU092711 |
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L2a1a3a |
T9165C |
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EU092890 |
EU092905 |
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L2a1a3b |
G3316A |
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DQ304948 |
JQ044819 |
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L2a1a3c |
C9449T
C16256T |
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HM771168 |
JQ045101 |
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T16189C!
(C16192T) |
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EU092806 |
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L2a1b |
G10143A |
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EU092761 |
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L2a1b1 |
C15735T |
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NA19129 |
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L2a1b1a |
T5090C
C16290T |
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EU092690 |
JX303858 |
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L2a1b2 |
A8116G |
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JQ044975 |
JQ044841 |
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G143A |
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NA19625 |
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L2a1b3 |
G207A T1189C |
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NA18856 |
JQ044837 |
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L2a1f |
A5581G |
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DQ304959 |
NA19125 |
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L2a1f1 |
A731G |
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DQ304961 |
DQ304955 |
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L2a1f1a |
A7394G |
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DQ304958 |
DQ304934 |
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L2a1f2 |
C11692T |
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DQ112698 |
DQ304957 |
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L2a1f3 |
C198T |
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KC533500 |
JQ044861 |
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L2a1g |
A8014G
C14281T T16131C C16225T
C16234T |
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KC533472 |
JX303906 |
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G143A |
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L2a1c |
G3010A
A6663G |
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EU092733 |
HM771224 |
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T16086C |
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JQ044973 |
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L2a1c1 |
C198T G930A
T3308C T8604C |
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FJ460560 |
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L2a1c1a |
C6311T |
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L2a1c1a1 |
T3338C |
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JQ705046 |
NA18868 |
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L2a1c1a2 |
C6164T |
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JQ412577 |
EU092954 |
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L2a1c6 |
A189G A4164G
C10954T C16169T |
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JN214436 |
JQ702659 |
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L2a1c2 |
C10903T
A15924G G16213A |
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JQ045108 |
JQ045024 |
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L2a1c2a |
G513A
C16193T C16239T |
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HM771169 |
JQ045025 |
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L2a1c3 |
G9932A |
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L2a1c3a |
C7858T |
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EU092663 |
EU200762 |
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L2a1c3a1 |
C198T A5843G
T15115C C16290T |
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JQ705145 |
NA19923 |
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L2a1c3b |
G16309A!
C16355T |
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JQ044996 |
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L2a1c3b1 |
T10410C |
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JQ045110 |
EU092720 |
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L2a1c3b2 |
T9854C
G14384A A14965G T16311C! |
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NA19096 |
JQ045063 |
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L2a1c4 |
A12172G |
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JN214432 |
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L2a1c4a |
T12354C |
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DQ304942 |
FJ460549 |
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L2a1c4a1 |
G5252A |
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DQ304951 |
NA18912 |
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G16129A! |
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JN858955 |
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L2a1c5 |
T13260C |
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NA18908 |
HM771225 |
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G16309A! |
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L2a1d |
C182T!! T5196C
T9530C T11386C A12612G
C13934T |
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L2a1d1 |
G12007A
A13395G T16209C C16301T
C16354T |
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EU092765 |
EU092939 |
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L2a1d2 |
C9356T |
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JX303838 |
JN858956 |
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L2a1h |
A3505G
T4772C C12976T |
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EU092676 |
EU092914 |
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L2a1e |
C3495a
G8790A G12630A |
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DQ304945 |
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L2a1e1 |
A143G! G8541A
A14599G |
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DQ304930 |
NA19116 |
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T16189C!
(C16192T) |
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FJ460527 |
HQ384198 |
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G16309A! |
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EU092793 |
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L2a1i |
T15229C
T16362C |
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JQ044958 |
JQ044905 |
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L2a1i1 |
C6164T
C10920T |
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JX303853 |
EF657335 |
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L2a1q |
T2746C
A13917G C16245T |
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JX303870 |
NA19381 |
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L2a1j |
G8764A
A14464G |
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EU092756 |
EU092816 |
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L2a1k |
G6722A
T12903C C16218T |
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EU200763 |
EU200760 |
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L2a1l |
C534T |
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L2a1l1 |
T12408C |
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JQ044956 |
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L2a1l1a |
T5580C |
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EU092807 |
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L2a1l1a1 |
C11059T |
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EU092812 |
JQ044817 |
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L2a1l1a2 |
T3345C |
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KF952774 |
JQ044897 |
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L2a1l1b |
A15880G |
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NA20332 |
JQ044955 |
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L2a1l2 |
C5366a |
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EU092721 |
|
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L2a1l2a |
A143G! T14180C |
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JX266264 |
JQ705185 |
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L2a1l2a1 |
C3573a |
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JX266265 |
JQ705589 |
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L2a1l3 |
G14905A T16357C |
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JX021728 |
NA18487 |
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L2a1m |
A13884G |
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JQ045040 |
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L2a1m1 |
8281-8289d |
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DQ304940 |
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L2a1m1a |
C8553T |
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JQ701914 |
DQ304938 |
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L2a1n |
A4317d
G5147A |
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DQ304941 |
NA18519 |
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L2a1o |
T12438C |
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JQ045000 |
EU092739 |
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L2a1p |
A9410G
T13818C C15626T |
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EU092671 |
JQ044822 |
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L2a2'3'4 |
C146T!! A6752G
T16189C! T16229C
T16311C! |
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L2a2'3 |
G709A
C15939T C16291T |
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L2a2 |
G9932A |
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L2a2a |
T9083C
G9438A G15803A |
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EU092896 |
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L2a2a1 |
C8727T |
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EU092902 |
HM771205 |
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L2a2b |
C195T!! C11767T
A14118G |
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L2a2b1 |
A13827G |
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NA19443 |
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L2a2b1a |
T182C! G7664A
A8721G A13068G T16172C |
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HM771208 |
HM771192 |
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L2a2b2 |
A235G G6383A
T9077C |
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HM771191 |
HM771207 |
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L2a3 |
C195T!!
A257G
T9797C T14894C T16086C A16215G |
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HM771206 |
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L2a4 |
G513A T593a
G9438A C13125T A16170G |
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L2a4a |
573.XC G5147A
C6959T G7897A T8614C
C12480T G15812A |
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HM771212 |
HM771196 |
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L2a4b |
C195T!! C2780T
G3834A T4703C A12612G
C16264T |
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NA19393 |
NA19376 |
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L2a5 |
C195T!!
T2626C
C3654T C5263T A6040c
T6497C T12879C A14890G
T16224C |
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NA19045 |
HQ384199 |
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L2b'c'd |
C2332T |
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L2b'c |
C198T G1442A
T7624a G12236A G15110A
G15217A |
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L2b |
T204C C1706T
A2358G A4158G T4370C
A4767G C5027T C5331a
T5814C C6713T C8080T
G8387A A12948G A14059G
C16114a G16129A!
G16213A |
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L2b1 |
C418T G6026A
T10828C C13924T T16362C |
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EU092747 |
EU092766 |
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L2b1a |
C146T!!
C16355T |
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JQ044854 |
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L2b1a2 |
A7569G |
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EU092722 |
JQ044890 |
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L2b1a3 |
G8856A |
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DQ304978 |
JX303882 |
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L2b1a4 |
G12406A |
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JN214453 |
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L2b1b |
A385G A6629G |
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FJ228403 |
JQ044800 |
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L2b2 |
T6614C
A6806G T8503C |
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EU092692 |
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L2b2a |
G709A
G8790A A9350G A13966G
C14407T C16354T |
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KC533513 |
JX303841 |
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L2b3 |
15944.1T |
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L2b3a |
C4185T
G5744A A8925G G14544A
A15236G G15326A |
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JQ702626 |
JQ702123 |
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L2b3b |
T2626C |
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EU092734 |
JN214443 |
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L2b3c |
T12011C |
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EU092661 |
NA19247 |
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L2c |
A93G
C325T
T680C G709A T3200a
G13928c G13958c C15849T |
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JQ044941 |
EU092723 |
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L2c1 |
A16318G |
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JQ044858 |
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L2c1a |
G93A! T5201C |
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EU092813 |
JQ044887 |
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L2c2 |
T1040C
C16264T |
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NA19229 |
EU092697 |
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L2c2a |
G15043A |
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DQ304988 |
EU092955 |
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L2c2a1 |
C869T
A5823G T13184C |
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JQ704740 |
JX303792 |
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L2c2b |
A183G |
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L2c2b1 |
T8772C
T15313C |
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L2c2b1a |
G1888A
C15574T |
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NA18517 |
JQ704094 |
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L2c2b1b |
T8567C
A9063G T10790C T16311C! |
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KC533455 |
EU092710 |
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L2c2b2 |
T9758C |
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JQ044878 |
JQ044853 |
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L2c3 |
G513A |
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JQ705626 |
JQ044810 |
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L2c3a |
C5255T
T8733C |
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AF346995 |
JQ045104 |
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L2c4 |
C13440T |
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JQ044914 |
DQ112735 |
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L2c5 |
G4596A |
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AY195785 |
NA19835 |
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L2d |
C152T!!
T182C! C456T C870T T2159C
C3254a A3434G G3693A
C6231T G9554A A9941G
C10955T T11353C C14845T
G15777c T16189C!
T16223C A16300G C16354T
A16399G |
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JQ045050 |
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G16129A! |
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JQ045069 |
EU092817 |
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L2d1 |
A10700G |
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JQ044948 |
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L2d1a |
G8856A
C15263T T15458C A15703G |
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EU092794 |
JQ045011 |
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L2e |
A479G G719A
G1211A A3537G A4562G
A5069t T6014C T8383C
A9377G C9971T T11935C
T12189C G13708A T14299C
T15697C G15734A T15889C
C16111a G16145A
C16184T C16239T C16292T
C16355T A16399G C16400T |
EU092724 |
DQ112709 |
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L2e1 |
C954T |
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JQ044816 |
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L2e1a |
G8994A
G11149A G13194A |
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NA19108 |
FJ460523 |
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