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PhyloTree.org -
mtDNA tree Build 17 (18 Feb 2016): subtree L5 |
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Citation: van Oven M, Kayser M.
2009. Updated comprehensive phylogenetic tree of global human mitochondrial
DNA variation. Hum Mutat 30(2):E386-E394. |
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Nucleotide position numbers are consistent
with both the rCRS and the RSRS reference sequences. |
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Mutations are given in forward evolutionary
time direction in the format [ancestral base][position number][derived base],
e.g. "G15043A". |
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In case of a transversion, the derived allele
is shown in lowercase instead of uppercase, e.g. "C5178a". |
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Insertions are indicated by the position
number preceding the insertion followed by a dot (.), the relative insert
position, and the inserted base(s), e.g. "2156.1A". |
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Deletions are indicated by the letter
"d" following the (range of) position number(s) involved, e.g.
"A249d" or "8281-8289d". |
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Mutations that are reversions to an ancestral
state (back mutations) are indicated with an exclamation mark (!), two
exclamation marks for a double back mutation (!!), etc., e.g.
"A15301G!". |
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Coding-region mutations (np 577-16023) are
shown in black; control-region mutations (np 16024-576) in blue. |
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Mutations between brackets () are
recurrent/unstable within the respective clade, or are yet uncertain based on
current data. |
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Mutation motifs in italic are preliminary and are likely to be further refined as
additional sequences become available. |
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The mutations 309.1C(C), 315.1C, AC indels at
515-522, A16182c, A16183c, 16193.1C(C) and C16519T/T16519C were not
considered for phylogenetic reconstruction and are therefore excluded from
the tree. |
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Accession numbers provided at the tips of
branches are representative examples of mtDNA sequences available at GenBank
or from individuals included in HapMap/1000Genomes. |
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It may be convenient to use the Find function
(Ctrl+F) of your browser to search for a particular mutation or haplogroup. |
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Example accessions |
mt-MRCA (RSRS) |
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L1'2'3'4'5'6 |
C146T
C182T
T4312C T10664C C10915T
A11914G G13276A G16230A |
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L2'3'4'5'6 |
C152T A2758G
C2885T G7146A T8468C |
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L2'3'4'6 |
C195T
A247G
A825t T8655C A10688G
C10810T G13105A T13506C
G15301A A16129G
T16187C C16189T |
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L3'4'6 |
G4104A
A7521G |
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L3'4 |
T182C! T3594C
T7256C T13650C T16278C |
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L3 |
A769G
A1018G C16311T |
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N |
G8701A
C9540T G10398A C10873T
A15301G! |
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R |
T12705C
T16223C |
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R0 |
G73A A11719G |
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HV |
T14766C |
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H |
G2706A
T7028C |
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H2 |
G1438A |
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H2a |
G4769A |
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H2a2 |
G750A |
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H2a2a |
G8860A
G15326A |
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H2a2a1 |
G263A |
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rCRS |
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L5 |
459.1C T3423C
A7972G C12432T A12950G
C16148T A16166G |
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L5a |
T152C!
455.1T
G709A A851G T1822C
C5111T G5147A A5656G
G6182A T6297C A7424G
G8155A A8188G C8582T
G9305A G9329A T11025C
C11881T G12236A A13722G
T14212C C14239T T14581C
G14905A T14971C G15217A
G15884A C16355T
T16362C |
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L5a1 |
455.2T G930A
C4496T C8754T |
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L5a1a |
T5004C
T9899C |
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EF556173 |
DQ341060 |
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L5a1b |
C14668T
T14819C |
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EU092943 |
EU092888 |
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L5a1c |
G513A C4137T |
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HM771198 |
NA19317 |
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L5a2 |
C527T G8856A |
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EU092699 |
JX303751 |
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L5b |
T182C! G13105A
A16254G C16311T |
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L5b1 |
A249d
C535T
C2417g T3027C A3720G
A4976G C5213T A9809c
T10493C T11701C T12188C
A12546t T12714C A12810G
T13569C T13830C C16111T C16360T |
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NA19373 |
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L5b1a |
C182T!! G8152A
A11065G T12215C |
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DQ341061 |
KC911364 |
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L5b1b |
T14581C |
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EU092774 |
NA19404 |
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L5b2 |
C195T
459.1Cd! T1717C
G1719A T2080C C2484T
A3564G G3918A G4092A
G4655A C4676T T4967C
A6527G A7765G G7789A
G7972G! T9018C T9653C
T10101C C11266T T11287C
T11809C A12507G G12940A
G12950A! A13050G C13383T
T13602C A15236G C15418T
C16189T T16368C
C16527T |
NA19332 |
NA19455 |
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